Topic: A Benchmark Analysis of Scientific Articles that use Single-Cell RNA Sequencing.
Advisor: Eli Zunder, PhD
Advisor: Mete Civlek, PhD
Topic: SH2 Domains: Contacts and Composition
Advisor: Kristin Naegle, PhD
Topic: Exploring the Effects of Increased Heart Rate of RAS Induced Heart Failure
Advisor: Pim Oomen, PhD
Topic: Metabolic Network Reconstruction for Gut Microbes Using Probabilistic Gene Annotation
Advisor: Greg Medlock, PhD
Topic:Towards a Computational Pipeline for Analyzing SARS-CoV-2 Mutations
Advisor: Phil Bourne, PhD / Cameron Mura, PhD
Topic: Modeling the Auto-activation of the Chromosome Passenger Complex
Advisor: Todd Stukenberg, PhD / Kevin Janes, PhD
Topic: Creating a Model of a Signaling Network: Exercise-Induced Cardiac Hypertrophy
Advisor: Jeff Saucerman, PhD
Topic: Image Processing and Modeling Sections of Fibrotic Cardiac Tissue
Advisor: Shayn Peirce-Cottler, PhD
Topic: 3D Finite Element Modeling the Effect of Fat Infiltration in Muscle Mechanics and Force Generation
Advisor: Silvia Blemker, PhD
Topic: Machine Learning Approach to NMR Spectra Cleaning
Topic: Applying PAGA to FLOWMAP Dataset
Topic: Genome-scale Metabolic Modeling Allows for greater Understanding of Gene Function in Cryptosporidium parvum
Advisor: Maureen Carey, PhD
Topic: Agent-Based Modeling of Hierarchical Network Formation for the Fabrication of Strong and Homogeneous Artificial Protein Hydrogels
Advisor: Shayn Peirce-Cottler. PhD
UVA Mentor: Eli Zunder
UVA Mentor: Laura Barnes
UVA Mentor: Greg Gerling
UVA Mentor: Mete Civelek
UVA Mentor: Silvia Blemker.
UVA Mentor: Jeff Holmes
UVA Mentor: Peter Kasson
UVA Mentor: Kristen Naegle
UVA Mentor: Jason Papin
UVA Mentor: Chongzhi Zang
In Silico Screens for Potential Modulators of Adverse Remodeling During Infarct Healing. Mentor: Jeffrey Saucerman (BME).
Agent Based Model of Intramuscular Fat Infiltration. Mentor: Silvia Blemker (BME).
Single Virus Fusion Study in Microfluidic Channels. Mentors: Peter Kasson (Molecular Physiol./BME) & Anjali Sengar (Mol. Physiol. & Biophysics).
Characterizing the Deformation of the Finger Pad in Contact with Compliant Objects. Mentor: Gregory Gerling (SIE).
Density Dependent Downsampling of CyTOF data. Mentor: Eli Zunder (BME).
Integrative Analysis of Gene Regulation in Smooth Muscle Cells. Mentors: Mete Civelek (CPHG/BME) & Warren Anderson (CPHG).
Agent Based Model of Macrophage Contributions to Cardiac Tissue Fibrosis. Mentor: Shayn Peirce-Cottler (BME).
Investigating Signaling Pathways that Promote EMT in the Hypoxic Microenvironment of Pancreatic Cancer. Mentor: Matthew Lazzara (ChE/BME).
Improving Predictions of Single Carbon Source Utilization in a Model of Pseudomonas aeruginosa. Mentor: Jason Papin (BME).
Modeling JNK Pathway Activation During Coxsackievirus B3 Replication in Cardiomyocytes. Mentor: Kevin Janes (BME).
Digital Biomarkers of Mental Health: An image-based approach to detecting loneliness. Mentor: Laura Barnes (SIE).
Multiscale Modeling of Muscle Atrophy in Astronauts
Mentored by Silvia Blemker and Shayn Peirce-Cottler, BME
Agent Based Model: Salmonella Host-Pathogen Interaction
Mentored by Shayn Peirce-Cottler, BME
Agent Based Modeling of Cardiac Fibroblasts: Connecting Tissue and Signaling Scales
Mentored by Jeffrey Holmes, BME
Effects of sex on regulation of gene expression in adipose tissue of mice
Mentored by Mete Civelek, BME/Public Health Genomics
Static Measurements and Analysis of the Healthy Levator Muscle in the Soft Palate
Mentored by Silvia Blemker, BME
Modeling Chronic Infection of CVB3 in Cardiomyocytes
Mentored by Kevin Janes, BME
Prognostic Modeling of Severe Sepsis in the ICU
Mentored by Laura Barnes, SIE
Using a Normalized-Hill Approach to Model 10 Biological Networks with Default Parameters
Mentored by Jeff Saucerman, BME
Characterization of Metabolic Network Models of AB Resistant Pseudomonas aeruginosa
Mentored by Jason Papin, BME
Multiple Cell-Specific Markers to Predict Neuronal Cell Fate
Mentored by Eli Zunder, BME, and Christopher Deppmann, Biology