Software
Software
In enabling research for our own lab, we also construct tools that can be used by the broader research community, with a focus on extendibility and reproducibility.
ASPEN: Reconstructing protein divergence histories
Naegle Lab Software
Subsampling from available ortholog sequences is a powerful technique for identifying the likely accuracy of an all-sequence tree, reconstructing more accurate trees, and...
OpenEnsembles
Naegle Lab Open Source Software
The OpenEnsembles project is an open source Python project to implement ensemble clustering for a greater accessibility to the approach.
ProteomeScout (replaces PTMScout)
Naegle Lab Open Source Software
ProteomeScout is a database of post-translational modifications and their quantitative experiments.